H3.3-K27M drives neural stem cell-specific gliomagenesis in a human iPSC-derived model

نویسندگان

چکیده

•iPSCs with inducible H3.3-K27M mutation targeted to the endogenous histone locus•The induces specific effects in different stem and progenitor cell types•H3.3-K27M drives tumorigenesis from neural cells but not glial progenitors•K27M variant H3.3 particularly disrupts bivalent chromatin domains Diffuse intrinsic pontine glioma (DIPG) is an aggressive childhood tumor of brainstem currently no curative treatment available. The vast majority DIPGs carry a H3 leading lysine 27-to-methionine exchange (H3K27M). We engineered human induced pluripotent (iPSCs) allele locus studied disease-relevant types. upregulated promoter-associated developmental genes, producing diverse outcomes While being fatal for iPSCs, increased proliferation (NSCs) lesser extent oligodendrocyte (OPCs). Only NSCs gave rise tumors upon induction TP53 inactivation orthotopic xenograft model recapitulating DIPGs. In NSCs, leads maintained expression stemness proliferative genes premature activation OPC programs that together may cause initiation. Pediatric high-grade gliomas (pedHGGs) account 10%–15% all brain children are characterized by poor response typically outcome (Broniscer Gajjar, 2004Broniscer A. Gajjar Supratentorial astrocytoma diffuse glioma: two challenges pediatric oncologist.Oncologist. 2004; 9: 197-206Crossref PubMed Scopus (159) Google Scholar; Ostrom et al., 2015Ostrom Q.T. de Blank P.M. Kruchko C. Petersen C.M. Liao P. Finlay J.L. Stearns D.S. Wolff J.E. Wolinsky Y. Letterio J.J. Barnholtz-Sloan J.S. Alex's lemonade stand foundation infant primary central nervous system diagnosed United States 2007-2011.Neuro Oncol. 2015; 16: x1-x36Crossref (289) Scholar). Around half pedHGGs exhibit growth brainstem, mostly pons, representing subgroup termed (Freeman Farmer, 1998Freeman C.R. Farmer J.P. gliomas: review.Int. J. Radiat. Biol. 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Khuong-Quang Konermann Sill Bender al.Hotspot IDH1 define biological glioblastoma.Cancer 22: 425-437Abstract (1153) H3K27M shows strong affinity methyltransferase EZH2, catalytic subunit polycomb repressive complex 2 (PRC2) responsible H3K27 trimethylation (H3K27me3), thereby inhibits PRC2's enzymatic activity (Lewis 2013Lewis P.W. Muller M.M. Koletsky M.S. Cordero F. Lin Banaszynski L.A. Garcia B.A. Muir T.W. Becher O.J. Allis C.D. Inhibition PRC2 gain-of-function glioblastoma.Science. 2013; 340: 857-861Crossref (757) Consequentially, H3K27me3 levels reduced inducing prominent tumor-driving such as (Bender 2013Bender Tang Lindroth Kool Zapatka Northcott P.A. Wang W. al.Reduced major drivers gene mutant gliomas.Cancer 24: 660-672Abstract (442) Chan 2013Chan K.M. Fang Gan Hashizume Yu Schroeder Gupta N. Mueller James Jenkins al.The H3.3K27M reprograms methylation expression.Genes Dev. 27: 985-990Crossref (416) Venneti 2013Venneti Garimella M.T. Sullivan L.M. Martinez Huse J.T. Heguy Santi Thompson C.B. Judkins A.R. Evaluation 3 27 (H3K27me3) enhancer Zest (EZH2) glioneuronal decreased glioblastomas.Brain Pathol. 23: 558-564Crossref (156) However, residual EZH2 still detected even at certain loci, appears be required DIPG formation maintenance (Mohammad 2017Mohammad Weissmann Leblanc B. Pandey D.P. Hojfeldt J.W. Comet I. Zheng Johansen J.V. Rapin Porse B.T. al.EZH2 potential target H3K27M-mutant gliomas.Nat. Med. 483-492Crossref (244) A recent study indicated recruitment majorly impaired spread across CpG islands blocked cells, preferentially affecting lowly expressed (Harutyunyan 2019Harutyunyan A.S. Krug Chen Papillon-Cavanagh Zeinieh De Jay Deshmukh C.C.L. Belle Mikael L.G. al.H3K27M defective PRC2-mediated H3K27me2/me3 essential tumorigenesis.Nat. Commun. 2019; 10: 1262Crossref (87) Hence, exact mechanism how mediates tumor-promoting deregulation remains determined. More recently, either HISTH3B, coding variants H3.1, respectively, have been recognized based on transcriptomic analysis (Castel 2015Castel Philippe Calmon Le Dret Truffaux Boddaert Pages Saulnier Lacroix al.Histone HIST1H3B prognosis phenotypes.Acta 130: 815-827Crossref Scholar, Castel 2018Castel Kergrohen T. Merlevede Barret Puget Sainte-Rose Kramm al.Transcriptomic profiling 'diffuse midline gliomas, K27M-mutant' discriminate type mutated supratentorial infratentorial location.Acta 2018; 6: 117Crossref (41) This might reflect important differences between function variants. H3.1 represents canonical variant; it primarily integrated into following replication compaction during mitosis. incorporation H3.3, hand, independent. Accordingly, deposition genome employs cellular machinery differs deposition, using variant-specific chaperone HIRA (histone cycle regulator) Daxx (death domain associated protein) (Goldberg 2010Goldberg A.D. Noh Lewis Elsaesser Stadler Dewell Law Guo X. Li al.Distinct factors control localization regions.Cell. 2010; 140: 678-691Abstract (813) 2010Lewis S.C. H3.3-specific cooperates ATRX replication-independent assembly telomeres.Proc. Natl. Acad. Sci. U S 107: 14075-14080Crossref (513) Elegant precursor population ventral pons spatiotemporal correlate tumor-forming patients (Ballester 2013Ballester L.Y. Z. Shandilya Miettinen Burger P.C. Eberhart C.G. Rodriguez F.J. Raabe Nazarian Warren Quezado Morphologic characteristics immunohistochemical profile gliomas.Am. Surg. 37: 1357-1364Crossref (38) 2011Monje Mitra S.S. Freret M.E. Raveh Kim Masek Attema Haddix Edwards al.Hedgehog-responsive candidate origin glioma.Proc. 2011; 108: 4453-4458Crossref (172) highly expresses oligodendroglial lineage marker OLIG2 well (NSC) markers SOX2 Nestin gives myelinating while clearly subventricular zone (Monje Tate 2015Tate M.C. Lindquist R.A. Nguyen Sanai Barkovich A.J. Huang E.J. Rowitch D.H. Alvarez-Buylla Postnatal pons: morphometric analysis.J. Comp. Neurol. 523: 449-462Crossref (25) Active super-enhancers, regulators identity, large set (Nagaraja 2017Nagaraja Vitanza N.A. Woo P.J. Zhang Meng Ponnuswami Sun al.Transcriptional dependencies 31: 635-652 e636Abstract (157) Scholar), DIPG-driving (OPC)-like signature (Filbin 2018Filbin M.G. Tirosh Shaw M.L. Escalante L.E. Mathewson N.D. Neftel Frank Pelton Hebert al.Developmental oncogenic dissected single-cell RNA-seq.Science. 360: 331-335Crossref (204) Collectively, these data suggest originate rather early cell. Multiple modeling approaches demonstrated role induction. Exogenous enhanced signaling results glioma-like when mouse postnatal (NPCs) (Cordero 2017Cordero Grenier He Hu McLendon R.E. Murphy S.K. Histone represses p16 accelerate gliomagenesis murine DIPG.Mol. Cancer Res. 1243-1254Crossref (75) Misuraca 2016Misuraca K.L. Barton Chung novel initiated pax3-expressing cells.Neoplasia. 2016; 18: 60-70Crossref (29) Scholar) xenografted embryonic (ESC)-derived NPCs (Funato 2014Funato Major Tabar Use mutation.Science. 346: 1529-1533Crossref (227) Similarly, Nestin-driven Cre-inducible transgene Trp53 knockout constitutively active Pdgfra produce DIPG-like (Larson 2019Larson J.D. Kasper L.H. Jin Kwon C.H. Fan T.I. Silveira A.B. accelerates spontaneous restricted changes expression.Cancer 35: 140-155 e147Abstract (99) overexpression give hindbrain cortex without exogenous NPC utero (Pathania 2017Pathania Maestro Harutyunyan Nitarska Pahlavan Henderson Richard-Londt al.H3.3(K27M) loss gain induce invasive 684-700 e689Abstract (104) Although confirming providing valuable insight related changes, models did finally clarify question, part limited over targeting stages. Finally, brains partially contain populations mice (Seri Alvarez-Buylla, 2002Seri Neural regulation neurogenesis hippocampus.Clin. Neurosci. 2002; 11-16Crossref (9) Sorrells 2018Sorrells S.F. Paredes M.F. Cebrian-Silla Sandoval Qi Kelley K.W. Mayer Chang Auguste K.I. al.Human hippocampal drops sharply undetectable adults.Nature. 555: 377-381Crossref (670) limiting predictive value models. present study, we investigated types identify most susceptible H3K27M-driven development. Recent analyses showed separation depending To test potentially context development maintenance, performed NSCs. Three previously lines (SU-DIPG VI, SU-DIPG XIII, XVII) (Grasso 2015Grasso C.S. Berlow N.E. Debily M.A. Quist M.J. Davis E.C. al.Functionally defined targets 21: 555-559Crossref (309) were subjected doxycycline (dox)-dependent H3.1-K27M, H3.3-K27M. Phenotypic assessment flow cytometry was conducted (dox concentrations). Wild-type (WT) generally had marked impact viability (Figures 1A S1A). contrast, H3.3-K27M, significantly apoptosis medium high dox concentrations three lines, although both cases 1B). Comparable H3.1-K27M corresponding confirmed staining flag-tagged transgenes immunoblotting (Figure S1B). Intriguingly, small molecule inhibition (EPZ005687) despite considerable reduction applied dose range, whereas strongly 1C 1D). observed increase G1 fraction out four S1C) consistent previous reports Wiese 2016Wiese Schill Pfister Hulleman Johnsen S.A. No significant cytotoxic effect inhibitor tazemetostat (EPZ-6438) wildtype 3.3.Klin Padiatr. 228: 113-117Crossref Targeted disruption CRISPR/Cas9 S1D S1E). Concordantly, non-responsive line also little overexpression, indicating capacity become independent resetting, likely through acquisition additional S1F). confirm general vulnerability altering balance pathologic landscape imply K27M-mutant secondary disease context. Since multiple successfully Pathania tested WT Importantly, increases expression, conditions 1E–1H). therefore focused further investigating constitutes transcriptionally regulated polyadenylation sites its 3′UTR involved stability tissue-specific translation (Feng 2005Feng Becker Berger Ye Akhmanova Hennig Regulation differential polyadenylation.Genome. 2005; 48: 503-510Crossref Pulcrano 2007Pulcrano Leonardo Piscopo Nargi Locascio Aniello Branno Fucci PLAUF binding 3'UTR transcript affects mRNA stability.Gene. 2007; 406: 124-133Crossref (4) 1982Wu R.S. Tsai Bonner W.M. Patterns synthesis can distinguish G0 cells.Cell. 1982; 367-374Abstract (163) Standard thus accurately abundance function. For meticulous approach, inserted conditional CRISPR/Cas9-mediated homologous recombination (iPSC) healthy individuals (C6-a C7-a) 2A). consisted hemagglutinin (HA)-tagged sequence deleted Cre-mediated HA-tagged Heterozygous modification long-range PCRs Sanger sequencing S2A). iPSCs exhibited normal H3K4me3 levels, Cre substantial 2B). investigate proliferating lineage, differentiated iPSC (C6-a_cl.II C7-a_cl.1) (iNSCs), (iOPCs), astroglial (iAstroglia) stepwise differentiation protocols (Douvaras 2014Douvaras Zimmer Hanchuk O'Bara Sadiq Sim Goldman Fossati Efficient generation oligodendrocytes progressive sclerosis cells.Stem Cell Rep. 3: 250-259Abstract Krencik Zhang, 2011Krencik Directed functional subtypes cells.Nat. Protoc. 1710-1717Crossref (154) Palm 2015Palm Bolognin Meiser Nickels Trager Meilenbrock R.L. Brockhaus Schreitmuller Missler Schwamborn J.C. Rapid robust long-term self-renewing ability generate mature astroglia.Sci. 5: 16321Crossref Differentiated iNSCs Nestin, SOX2, PAX6, iOPCs OLIG2-positive, iAstroglia robustly GFAP S2B). arrest media switch demonstrating identity commitment S2B S2C). (K27M), infected lentivirus expressing Cre-GFP. As control, used Flp-GFP lentivirus, merely looped initial selection cassette left frame. Upon induction, mild 2C). iOPCs, led pronounced iNSCs. 2C S2D). then whether iNSC iOPC reflects advantage stages blocking self-organizing cerebral organoids derived (Lancaster Knoblich, 2014Lancaster Knoblich J.A. Generation 2329-2340Crossref (604) Induction first steps embryoid body lead difference organoid size nor outgrowth Cre-GFP after weeks differentiation. contained slightly SOX2+ Nestin+ change OLIG2+ suggesting tendency retain self-renewal 2D S2E). enriched Ki-67. Thus, confer prior NSC specification. H3K27M-dependent transformation Funato Larson Henderso

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ژورنال

عنوان ژورنال: Cancer Cell

سال: 2021

ISSN: ['1878-3686', '1535-6108']

DOI: https://doi.org/10.1016/j.ccell.2021.01.005